This if for ANYONE installing a thermal intake manifold gasket. In fact, even if you have the stock gasket it's a good idea to move the ground when using FlashPro. From what I recall, there are two wires that come off the fuel rail wire loom and ground to the intake manifold. Move those 2 to the head.
I wish I had seen these DIY threads earlier -- I could of warned you of the dangers of not relocating the ground to the head. I bet everyone that's done this has left the ground on the intake manifold. When you install the thermal manifold gasket it insulates the manifold and creates a VERY high resistance ground -- this is bad, as the electrical system wants to seek out the lowest path of resistance. Fizzle goes stuff in your electrical system when this happens. I've seen people fry their ECU's an FlashPro's when grounded to the intake manifold (usually the FlashPros).
So be smart, ground to the head! It's VERY easy.